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Publications
2026
Khoury K E, Zanella M, Godelaine T, Vleeschouwer C D, Macq B
Leveraging prediction entropy for Automatic prompt weighting in Zero-Shot Audio-Language Classification Proceedings Article
In: ICASSP 2026 - 2026 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pp. 16127–16131, IEEE, Barcelona, Spain, 2026, ISBN: 979-8-3315-6701-9.
@inproceedings{khoury_leveraging_2026,
title = {Leveraging prediction entropy for Automatic prompt weighting in Zero-Shot Audio-Language Classification},
author = {Karim El Khoury and Maxime Zanella and Tiffanie Godelaine and Christophe De Vleeschouwer and Benoît Macq},
url = {https://ieeexplore.ieee.org/document/11460685/},
doi = {10.1109/ICASSP55912.2026.11460685},
isbn = {979-8-3315-6701-9},
year = {2026},
date = {2026-05-01},
urldate = {2026-05-18},
booktitle = {ICASSP 2026 - 2026 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},
pages = {16127–16131},
publisher = {IEEE},
address = {Barcelona, Spain},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Godelaine T, Zanella M, Khoury K E, Mahmoudi S, Macq B, Vleeschouwer C D
Conditional Random Fields for Interactive Refinement of Histopathological Predictions Proceedings Article
In: ICASSP 2026 - 2026 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pp. 7682–7686, IEEE, Barcelona, Spain, 2026, ISBN: 979-8-3315-6701-9.
@inproceedings{godelaine_conditional_2026,
title = {Conditional Random Fields for Interactive Refinement of Histopathological Predictions},
author = {Tiffanie Godelaine and Maxime Zanella and Karim El Khoury and Saïd Mahmoudi and Benoît Macq and Christophe De Vleeschouwer},
url = {https://ieeexplore.ieee.org/document/11460329/},
doi = {10.1109/ICASSP55912.2026.11460329},
isbn = {979-8-3315-6701-9},
year = {2026},
date = {2026-05-01},
urldate = {2026-05-18},
booktitle = {ICASSP 2026 - 2026 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},
pages = {7682–7686},
publisher = {IEEE},
address = {Barcelona, Spain},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Hanseeuw B J, Quenon L, Bayart J, Boyer E, Colmant L, Salman Y, Gérard T, Huyghe L, Malotaux V, Kienlen-Campard P, Pirson F B, Lhommel R, Dricot L, Ivanoiu A, Shamsundar K, Pak W, Soldo J, Iqbal K
Tau pathological activity in plasma before the onset of symptomatic Alzheimer’s disease Miscellaneous
2026.
@misc{hanseeuw_tau_2026,
title = {Tau pathological activity in plasma before the onset of symptomatic Alzheimer’s disease},
author = {Bernard J. Hanseeuw and Lisa Quenon and Jean-Louis Bayart and Emilien Boyer and Lise Colmant and Yasmine Salman and Thomas Gérard and Lara Huyghe and Vincent Malotaux and Pascal Kienlen-Campard and Flo Blondiaux Pirson and Renaud Lhommel and Laurence Dricot and Adrian Ivanoiu and Kavya Shamsundar and Winnie Pak and Joshua Soldo and Khalid Iqbal},
url = {http://medrxiv.org/lookup/doi/10.64898/2026.04.03.26350110},
doi = {10.64898/2026.04.03.26350110},
year = {2026},
date = {2026-04-01},
urldate = {2026-05-18},
publisher = {Neurology},
abstract = {Abstract
Alzheimer’s disease (AD) and other tauopathies are characterized by the hyperphosphorylation of tau (pTau), leading to its aggregation in the brain, a process strongly predictive of neurodegeneration and future cognitive decline. Currently, tau positron emission tomography (PET) is the only validated method for detecting tau aggregates in vivo. However, its high cost, invasiveness, and limited accessibility restrict its use in clinical settings and preclude large-scale screening. Moreover, existing plasma biomarkers that quantify the level of pTau at specific sites (e.g., pTau217) have limited specificity for confirming AD-related tau aggregation, partly due to the heterogeneous and irregular phosphorylation patterns of pTau. Besides, the concentration of pTau is frequently elevated in the context of isolated amyloid-β pathology, which is less strongly associated with cognitive decline in the absence of aggregated tau. There is therefore an urgent need for a reliable and scalable blood-based biomarker of tau pathology. A key mechanism underlying AD tau pathology is the ability of pathologically active pTau (PA pTau) to bind to and seed normal tau, facilitating prion-like propagation of insoluble tau aggregates. Here, we assessed the diagnostic performance of the VeraBIND Tau assay, the first functional assay to detect PA pTau seeding activity in plasma.
Seventy-nine cognitively unimpaired (CU) and 66 cognitively impaired older adults underwent blood sampling, cognitive assessment, amyloid-PET or cerebrospinal fluid (CSF) analysis, and [
18
F]-MK6240 tau-PET imaging. Plasma pTau217 concentrations were quantified using the Lumipulse platform (Fujirebio). The VeraBIND Tau assay isolated PA pTau from plasma and evaluated its ability to bind recombinant normal tau using a tagged-tau chemiluminescent readout. VeraBIND Tau demonstrated 94.2% sensitivity and 96.1% specificity for predicting tau-PET positivity (AUC=0.97). It outperformed plasma pTau217 in CU individuals (PPV=85.9%), regardless of the pTau217 threshold used (maximal PPV of 57.5% using the 0.256pg/mL pTau217 threshold). This higher VeraBIND Tau diagnostic accuracy was driven by early tau-PET stages (Braak-like tau-PET stages 1-3; AUC=0.96 vs. 0.74 for pTau217},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
Alzheimer’s disease (AD) and other tauopathies are characterized by the hyperphosphorylation of tau (pTau), leading to its aggregation in the brain, a process strongly predictive of neurodegeneration and future cognitive decline. Currently, tau positron emission tomography (PET) is the only validated method for detecting tau aggregates in vivo. However, its high cost, invasiveness, and limited accessibility restrict its use in clinical settings and preclude large-scale screening. Moreover, existing plasma biomarkers that quantify the level of pTau at specific sites (e.g., pTau217) have limited specificity for confirming AD-related tau aggregation, partly due to the heterogeneous and irregular phosphorylation patterns of pTau. Besides, the concentration of pTau is frequently elevated in the context of isolated amyloid-β pathology, which is less strongly associated with cognitive decline in the absence of aggregated tau. There is therefore an urgent need for a reliable and scalable blood-based biomarker of tau pathology. A key mechanism underlying AD tau pathology is the ability of pathologically active pTau (PA pTau) to bind to and seed normal tau, facilitating prion-like propagation of insoluble tau aggregates. Here, we assessed the diagnostic performance of the VeraBIND Tau assay, the first functional assay to detect PA pTau seeding activity in plasma.
Seventy-nine cognitively unimpaired (CU) and 66 cognitively impaired older adults underwent blood sampling, cognitive assessment, amyloid-PET or cerebrospinal fluid (CSF) analysis, and [
18
F]-MK6240 tau-PET imaging. Plasma pTau217 concentrations were quantified using the Lumipulse platform (Fujirebio). The VeraBIND Tau assay isolated PA pTau from plasma and evaluated its ability to bind recombinant normal tau using a tagged-tau chemiluminescent readout. VeraBIND Tau demonstrated 94.2% sensitivity and 96.1% specificity for predicting tau-PET positivity (AUC=0.97). It outperformed plasma pTau217 in CU individuals (PPV=85.9%), regardless of the pTau217 threshold used (maximal PPV of 57.5% using the 0.256pg/mL pTau217 threshold). This higher VeraBIND Tau diagnostic accuracy was driven by early tau-PET stages (Braak-like tau-PET stages 1-3; AUC=0.96 vs. 0.74 for pTau217
Salman Y, Gérard T, Huyghe L, Colmant L, Malotaux V, Bayart J, Boyer E, Pirson F B, Kienlen-Campard P, Dricot L, Lhommel R, Ivanoiu A, Quenon L, Hanseeuw B J
Amygdala shows heterogeneous atrophy and tauopathy patterns across the AD continuum Miscellaneous
2026.
@misc{salman_amygdala_2026,
title = {Amygdala shows heterogeneous atrophy and tauopathy patterns across the AD continuum},
author = {Yasmine Salman and Thomas Gérard and Lara Huyghe and Lise Colmant and Vincent Malotaux and Jean-Louis Bayart and Emilien Boyer and Flo Blondiaux Pirson and Pascal Kienlen-Campard and Laurence Dricot and Renaud Lhommel and Adrian Ivanoiu and Lisa Quenon and Bernard J Hanseeuw},
url = {https://www.researchsquare.com/article/rs-9039168/v1},
doi = {10.21203/rs.3.rs-9039168/v1},
year = {2026},
date = {2026-03-01},
urldate = {2026-05-18},
publisher = {In Review},
abstract = {Abstract
Background
Amygdala shows early vulnerability in Alzheimer’s disease (AD), although its substructures have been less studied than hippocampal subfields. Neuropathological evidence suggests that tau pathology affects amygdala subnuclei differentially, yet in vivo characterization of subregional amygdala atrophy, its relationship with tau burden, blood-based biomarkers, and cognitive outcomes across the AD continuum remains limited. Clarifying whether amygdala degeneration follows a homogeneous or regionally selective pattern, how it relates to plasma tau biomarkers, and whether it has functional consequences is essential for improving early detection and disease modeling.
Methods
The study analyzed data from 197 participants, including 71 Aβ-negative cognitively normal individuals (Aβ − CN), 31 Aβ-positive cognitively normal individuals (Aβ + CN), and 95 Aβ-positive cognitively impaired individuals (Aβ + CI). All participants underwent T1-weighted MRI, [
18
F]-MK-6240 tau PET imaging, comprehensive neuropsychological assessment, and plasma pTau181 and pTau217 and Aβ42/40 analyses. Amygdala subregion volumes and tau standardized uptake value ratios (SUVr) were extracted using FreeSurfer-based segmentation and classified into basal, centro-medial, and lateral amygdala subregions. Regional amygdala volumes and SUVr were compared across groups and examined for associations with plasma tau biomarkers and cognitive performance. Mediation analyses assessed whether subregional amygdala atrophy mediated the relationship between tau pathology and cognition.
Results
Pronounced regional heterogeneity was observed within the amygdala. Atrophy of the centro-medial subregion was detectable at the preclinical stage of AD, preceding cognitive impairment. This vulnerability was not associated with a higher local tau burden. However, lower centro-medial amygdala volume was significantly associated with higher plasma pTau181 and pTau217 levels, as well as with lower memory and executive scores. Mediation analyses demonstrated that centro-medial amygdala volume mediated the effect of tau pathology on memory performance.
Conclusion
These findings suggest that amygdala involvement in AD is regionally heterogeneous, appears early in the AD continuum, and has clinically significant cognitive consequences. Subregional quantification of the amygdala, particularly when combined with plasma pTau biomarkers, may provide sensitive early indicators of disease-related neurodegeneration, reflect network-level vulnerability, and improve understanding of cognitive decline, confirming its potential utility as a biomarker in AD research and clinical practice.},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
Background
Amygdala shows early vulnerability in Alzheimer’s disease (AD), although its substructures have been less studied than hippocampal subfields. Neuropathological evidence suggests that tau pathology affects amygdala subnuclei differentially, yet in vivo characterization of subregional amygdala atrophy, its relationship with tau burden, blood-based biomarkers, and cognitive outcomes across the AD continuum remains limited. Clarifying whether amygdala degeneration follows a homogeneous or regionally selective pattern, how it relates to plasma tau biomarkers, and whether it has functional consequences is essential for improving early detection and disease modeling.
Methods
The study analyzed data from 197 participants, including 71 Aβ-negative cognitively normal individuals (Aβ − CN), 31 Aβ-positive cognitively normal individuals (Aβ + CN), and 95 Aβ-positive cognitively impaired individuals (Aβ + CI). All participants underwent T1-weighted MRI, [
18
F]-MK-6240 tau PET imaging, comprehensive neuropsychological assessment, and plasma pTau181 and pTau217 and Aβ42/40 analyses. Amygdala subregion volumes and tau standardized uptake value ratios (SUVr) were extracted using FreeSurfer-based segmentation and classified into basal, centro-medial, and lateral amygdala subregions. Regional amygdala volumes and SUVr were compared across groups and examined for associations with plasma tau biomarkers and cognitive performance. Mediation analyses assessed whether subregional amygdala atrophy mediated the relationship between tau pathology and cognition.
Results
Pronounced regional heterogeneity was observed within the amygdala. Atrophy of the centro-medial subregion was detectable at the preclinical stage of AD, preceding cognitive impairment. This vulnerability was not associated with a higher local tau burden. However, lower centro-medial amygdala volume was significantly associated with higher plasma pTau181 and pTau217 levels, as well as with lower memory and executive scores. Mediation analyses demonstrated that centro-medial amygdala volume mediated the effect of tau pathology on memory performance.
Conclusion
These findings suggest that amygdala involvement in AD is regionally heterogeneous, appears early in the AD continuum, and has clinically significant cognitive consequences. Subregional quantification of the amygdala, particularly when combined with plasma pTau biomarkers, may provide sensitive early indicators of disease-related neurodegeneration, reflect network-level vulnerability, and improve understanding of cognitive decline, confirming its potential utility as a biomarker in AD research and clinical practice.
Pizzolla E, Tecco J M, Petzold M B, Briganti G
A Network Analysis of Panic Disorder, Agoraphobia, and Generalized Anxiety Disorder in 463 Patients From a Psychiatric Hospital Journal Article
In: Brain and Behavior, vol. 16, no. 2, pp. e71241, 2026, ISSN: 2162-3279, 2162-3279.
@article{pizzolla_network_2026,
title = {A Network Analysis of Panic Disorder, Agoraphobia, and Generalized Anxiety Disorder in 463 Patients From a Psychiatric Hospital},
author = {Emanuela Pizzolla and Juan Martin Tecco and Moritz Bruno Petzold and Giovanni Briganti},
url = {https://onlinelibrary.wiley.com/doi/10.1002/brb3.71241},
doi = {10.1002/brb3.71241},
issn = {2162-3279, 2162-3279},
year = {2026},
date = {2026-02-01},
urldate = {2026-05-18},
journal = {Brain and Behavior},
volume = {16},
number = {2},
pages = {e71241},
abstract = {ABSTRACT
Introduction:
Panic disorder, agoraphobia, and generalized anxiety disorder (GAD) frequently co‐occur and share overlapping symptoms, yet it remains unclear whether they reflect distinct or interconnected symptom systems. This study examined the network structure of these disorders using clinician‐administered diagnostic data.
Methods:
A total of 463 adults completed the Mini International Neuropsychiatric Interview (M.I.N.I.) conducted by trained clinicians. Eighteen items from the panic disorder, agoraphobia, and GAD modules were retained after a multistep selection procedure ensuring clinical relevance, endorsement variability, and nonredundancy. A binary Ising network was estimated using eLASSO with EBIC model selection. Network accuracy, stability, and edge differences were evaluated through nonparametric bootstrapping.
Results:
The estimated network revealed two well‐defined symptom clusters corresponding to (1) panic–agoraphobia and (2) GAD. Within the panic–agoraphobia cluster, physiological symptoms (e.g., palpitations, shortness of breath, sweating, dizziness) were tightly interconnected, and catastrophic cognitions (fear of dying, fear of losing control) were moderately linked to bodily sensations. Agoraphobia symptoms were strongly connected to each other but relatively peripheral to other panic symptoms. The GAD cluster was anchored by difficulty controlling worry, which emerged as the most central symptom and showed strong associations with restlessness, sleep disturbance, fatigue, and irritability. Notably, no direct edges were found between panic–agoraphobia and GAD symptoms, suggesting distinct anxiety systems.
Conclusion:
These findings indicate that fear‐based and worry‐based anxiety symptoms form separable yet clinically relevant structures. Focusing on core processes like excessive worry and interoceptive regulation could enhance the specificity of interventions and more effectively disrupt anxiety maintenance mechanisms.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Introduction:
Panic disorder, agoraphobia, and generalized anxiety disorder (GAD) frequently co‐occur and share overlapping symptoms, yet it remains unclear whether they reflect distinct or interconnected symptom systems. This study examined the network structure of these disorders using clinician‐administered diagnostic data.
Methods:
A total of 463 adults completed the Mini International Neuropsychiatric Interview (M.I.N.I.) conducted by trained clinicians. Eighteen items from the panic disorder, agoraphobia, and GAD modules were retained after a multistep selection procedure ensuring clinical relevance, endorsement variability, and nonredundancy. A binary Ising network was estimated using eLASSO with EBIC model selection. Network accuracy, stability, and edge differences were evaluated through nonparametric bootstrapping.
Results:
The estimated network revealed two well‐defined symptom clusters corresponding to (1) panic–agoraphobia and (2) GAD. Within the panic–agoraphobia cluster, physiological symptoms (e.g., palpitations, shortness of breath, sweating, dizziness) were tightly interconnected, and catastrophic cognitions (fear of dying, fear of losing control) were moderately linked to bodily sensations. Agoraphobia symptoms were strongly connected to each other but relatively peripheral to other panic symptoms. The GAD cluster was anchored by difficulty controlling worry, which emerged as the most central symptom and showed strong associations with restlessness, sleep disturbance, fatigue, and irritability. Notably, no direct edges were found between panic–agoraphobia and GAD symptoms, suggesting distinct anxiety systems.
Conclusion:
These findings indicate that fear‐based and worry‐based anxiety symptoms form separable yet clinically relevant structures. Focusing on core processes like excessive worry and interoceptive regulation could enhance the specificity of interventions and more effectively disrupt anxiety maintenance mechanisms.
Delinte N, Salavrakos M, Dausort M, Dricot L, Hermans P, Timary P D, Macq B
White matter microstructure alterations from alcohol use disorder persist into early abstinence Journal Article
In: Brain Communications, vol. 8, no. 1, pp. fcag018, 2026, ISSN: 2632-1297.
@article{delinte_white_2026,
title = {White matter microstructure alterations from alcohol use disorder persist into early abstinence},
author = {Nicolas Delinte and Melissa Salavrakos and Manon Dausort and Laurence Dricot and Pauline Hermans and Philippe De Timary and Benoit Macq},
url = {https://academic.oup.com/braincomms/article/doi/10.1093/braincomms/fcag018/8430769},
doi = {10.1093/braincomms/fcag018},
issn = {2632-1297},
year = {2026},
date = {2026-01-01},
urldate = {2026-02-23},
journal = {Brain Communications},
volume = {8},
number = {1},
pages = {fcag018},
abstract = {Abstract
Alcohol use disorder (AUD) is a complex condition including affective, cognitive and motivational dimensions. Although AUD is known to induce diffuse brain damage, including grey matter shrinkage and ventricular enlargement, the microstructural changes it induces in white matter remain incompletely understood. This study leverages multi-shell diffusion MRI and multi-fixel models to (i) undertake whole-brain and tract-specific analyses to investigate the microstructure of white matter (WM) tracts affected by AUD, (ii) evaluate whether these differences persist in early abstinence, and (iii) correlate these results with clinical measures evaluated by validated psychological questionnaires. We recruited a final cohort of 37 AUD patients, admitted for alcohol withdrawal and selected for their ongoing alcohol consumption at the time of admission, and a demographically matched control group of 19 healthy subjects. Both groups underwent MRI scans at baseline and 18 days later, with assessments of depression, obsession-compulsion, and anxiety conducted in both sessions for the AUD patients and once for the control group. The imaging results confirmed the presence in AUD participants of clusters microstructural alterations in the fornix, corpus callosum, cingulum, uncinate fasciculus and anterior thalamic radiations. These white matter tracts presented global and localized microstructural changes in axial diffusivity and fractional anisotropy, which are linked to axonal damage and inflammation. There was no significant improvement in the diffusion metrics after almost three weeks of abstinence, although clinical measures did improve significantly. Depression scores were significantly elevated in the patients at admission and decreased with time. Depression scores before withdrawal showed correlations with microstructural metrics across the right anterior thalamic radiations, the isthmus of the corpus callosum, and the right uncinate fasciculus. Lower fractional anisotropy and higher radial diffusivity were predictive of higher depression scores. Overall, these findings highlight the long-term vulnerability of WM tracts affected by AUD and the link between tract microstructure, brain function and behaviour.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Alcohol use disorder (AUD) is a complex condition including affective, cognitive and motivational dimensions. Although AUD is known to induce diffuse brain damage, including grey matter shrinkage and ventricular enlargement, the microstructural changes it induces in white matter remain incompletely understood. This study leverages multi-shell diffusion MRI and multi-fixel models to (i) undertake whole-brain and tract-specific analyses to investigate the microstructure of white matter (WM) tracts affected by AUD, (ii) evaluate whether these differences persist in early abstinence, and (iii) correlate these results with clinical measures evaluated by validated psychological questionnaires. We recruited a final cohort of 37 AUD patients, admitted for alcohol withdrawal and selected for their ongoing alcohol consumption at the time of admission, and a demographically matched control group of 19 healthy subjects. Both groups underwent MRI scans at baseline and 18 days later, with assessments of depression, obsession-compulsion, and anxiety conducted in both sessions for the AUD patients and once for the control group. The imaging results confirmed the presence in AUD participants of clusters microstructural alterations in the fornix, corpus callosum, cingulum, uncinate fasciculus and anterior thalamic radiations. These white matter tracts presented global and localized microstructural changes in axial diffusivity and fractional anisotropy, which are linked to axonal damage and inflammation. There was no significant improvement in the diffusion metrics after almost three weeks of abstinence, although clinical measures did improve significantly. Depression scores were significantly elevated in the patients at admission and decreased with time. Depression scores before withdrawal showed correlations with microstructural metrics across the right anterior thalamic radiations, the isthmus of the corpus callosum, and the right uncinate fasciculus. Lower fractional anisotropy and higher radial diffusivity were predictive of higher depression scores. Overall, these findings highlight the long-term vulnerability of WM tracts affected by AUD and the link between tract microstructure, brain function and behaviour.
Pizzolla E, Ouahidi W E, Segers K, Surquin M, Benoît F, Briganti G
Mapping Symptom Complexity in Dementia With Lewy Bodies: A Network Analysis Approach Journal Article
In: The Journal of Neuropsychiatry and Clinical Neurosciences, pp. appi.neuropsych.20240223, 2026, ISSN: 0895-0172, 1545-7222.
@article{pizzolla_mapping_2026,
title = {Mapping Symptom Complexity in Dementia With Lewy Bodies: A Network Analysis Approach},
author = {Emanuela Pizzolla and Wissal El Ouahidi and Kurt Segers and Murielle Surquin and Florence Benoît and Giovanni Briganti},
url = {https://psychiatryonline.org/doi/10.1176/appi.neuropsych.20240223},
doi = {10.1176/appi.neuropsych.20240223},
issn = {0895-0172, 1545-7222},
year = {2026},
date = {2026-01-01},
urldate = {2026-05-18},
journal = {The Journal of Neuropsychiatry and Clinical Neurosciences},
pages = {appi.neuropsych.20240223},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Manjah D, Bary T, Macq B, Galland S
Holonic Active Distillation for Scalable Multi-agent Learning in Multi-sensor Systems Book Section
In: Rodriguez, Sebastian; Feng, Lu; Müller, Jörg P. (Ed.): Engineering Multi-Agent Systems, vol. 16407, pp. 80–99, Springer Nature Switzerland, Cham, 2026, ISBN: 978-3-032-18010-0 978-3-032-18011-7, (Series Title: Lecture Notes in Computer Science).
@incollection{rodriguez_holonic_2026,
title = {Holonic Active Distillation for Scalable Multi-agent Learning in Multi-sensor Systems},
author = {Dani Manjah and Tim Bary and Benoit Macq and Stéphane Galland},
editor = {Sebastian Rodriguez and Lu Feng and Jörg P. Müller},
url = {https://link.springer.com/10.1007/978-3-032-18011-7_6},
doi = {10.1007/978-3-032-18011-7_6},
isbn = {978-3-032-18010-0 978-3-032-18011-7},
year = {2026},
date = {2026-01-01},
urldate = {2026-05-18},
booktitle = {Engineering Multi-Agent Systems},
volume = {16407},
pages = {80–99},
publisher = {Springer Nature Switzerland},
address = {Cham},
note = {Series Title: Lecture Notes in Computer Science},
keywords = {},
pubstate = {published},
tppubtype = {incollection}
}
2025
Bulcke C V, Stölting A, Borrelli S, Macq B, Cuadra M B, Absinta M, Maggi P
Do slowly expanding lesions correspond to chronic active multiple sclerosis lesions? An integrated imaging analysis study Miscellaneous
2025.
@misc{vanden_bulcke_slowly_2025,
title = {Do slowly expanding lesions correspond to chronic active multiple sclerosis lesions? An integrated imaging analysis study},
author = {Colin Vanden Bulcke and Anna Stölting and Serena Borrelli and Benoît Macq and Meritxell Bach Cuadra and Martina Absinta and Pietro Maggi},
url = {http://medrxiv.org/lookup/doi/10.64898/2025.12.03.25341192},
doi = {10.64898/2025.12.03.25341192},
year = {2025},
date = {2025-12-01},
urldate = {2026-05-18},
publisher = {Neurology},
abstract = {Abstract
Chronic active lesions (CALs) are a hallmark of multiple sclerosis (MS) pathology, associated with extensive tissue damage, disability progression, and overall disease burden. Histopathologically, they consist of a hypocellular core surrounded by a rim of iron-laden, chronically activated microglia/macrophages. Proposed magnetic resonance imaging (MRI) biomarkers of CALs are paramagnetic rim lesions (PRLs) or slowly expanding lesions (SELs), detected respectively on susceptibility-based images or on longitudinal conventional MRI. While PRLs are histopathologically validated
in vivo correlates of CALs, SELs lack pathological validation. In this study, we examine the relationship between SELs and PRLs and evaluate the robustness of the SEL detection algorithm in 56 MS participants, all imaged using a strictly homogeneous protocol on the same 3T scanner for three consecutive timepoints. PRLs included distinct subgroups of both shrinking and expanding lesions (p < 0.001), challenging the assumption that CALs necessarily expand over time. SEL detection demonstrated instability across different input resolution and segmentation methods, yielding a mean dice similarity score of 0.375. In random forest analysis, SEL volume showed inconsistent and weaker predictive value for MS disability and severity (EDSS, MSSS) compared to PRL volume. Critically, lesion-level overlap between SELs and PRLs was negligible (Cohen’s κ = –0.022) once corrected for overlap by chance. Taken together, our findings indicate that SELs and PRLs are essentially independent, underscoring the need for a refined longitudinal volumetric definition to establish a reliable CALs’ biomarker.},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
Chronic active lesions (CALs) are a hallmark of multiple sclerosis (MS) pathology, associated with extensive tissue damage, disability progression, and overall disease burden. Histopathologically, they consist of a hypocellular core surrounded by a rim of iron-laden, chronically activated microglia/macrophages. Proposed magnetic resonance imaging (MRI) biomarkers of CALs are paramagnetic rim lesions (PRLs) or slowly expanding lesions (SELs), detected respectively on susceptibility-based images or on longitudinal conventional MRI. While PRLs are histopathologically validated
in vivo correlates of CALs, SELs lack pathological validation. In this study, we examine the relationship between SELs and PRLs and evaluate the robustness of the SEL detection algorithm in 56 MS participants, all imaged using a strictly homogeneous protocol on the same 3T scanner for three consecutive timepoints. PRLs included distinct subgroups of both shrinking and expanding lesions (p < 0.001), challenging the assumption that CALs necessarily expand over time. SEL detection demonstrated instability across different input resolution and segmentation methods, yielding a mean dice similarity score of 0.375. In random forest analysis, SEL volume showed inconsistent and weaker predictive value for MS disability and severity (EDSS, MSSS) compared to PRL volume. Critically, lesion-level overlap between SELs and PRLs was negligible (Cohen’s κ = –0.022) once corrected for overlap by chance. Taken together, our findings indicate that SELs and PRLs are essentially independent, underscoring the need for a refined longitudinal volumetric definition to establish a reliable CALs’ biomarker.
Fuchs C, Bary T, Macq B
Localized Conformal Prediction for Image Classification with Vision-Language Models Proceedings Article
In: 2025 13th European Workshop on Visual Information Processing (EUVIP), pp. 1–6, IEEE, Valletta, Malta, 2025, ISBN: 979-8-3315-7515-1.
@inproceedings{fuchs_localized_2025,
title = {Localized Conformal Prediction for Image Classification with Vision-Language Models},
author = {Clément Fuchs and Tim Bary and Benoît Macq},
url = {https://ieeexplore.ieee.org/document/11238757/},
doi = {10.1109/EUVIP66349.2025.11238757},
isbn = {979-8-3315-7515-1},
year = {2025},
date = {2025-10-01},
urldate = {2026-05-18},
booktitle = {2025 13th European Workshop on Visual Information Processing (EUVIP)},
pages = {1–6},
publisher = {IEEE},
address = {Valletta, Malta},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Bary T, Godelaine T, Abels A, Macq B
Optimizing Resources for On-the-Fly Label Estimation with Multiple Unknown Medical Experts Proceedings Article
In: 2025 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI), pp. 1–7, IEEE, Atlanta, GA, USA, 2025, ISBN: 979-8-3315-9207-3.
@inproceedings{bary_optimizing_2025,
title = {Optimizing Resources for On-the-Fly Label Estimation with Multiple Unknown Medical Experts},
author = {Tim Bary and Tiffanie Godelaine and Axel Abels and Benoît Macq},
url = {https://ieeexplore.ieee.org/document/11269527/},
doi = {10.1109/BHI67747.2025.11269527},
isbn = {979-8-3315-9207-3},
year = {2025},
date = {2025-10-01},
urldate = {2026-05-18},
booktitle = {2025 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI)},
pages = {1–7},
publisher = {IEEE},
address = {Atlanta, GA, USA},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Ghislain M, Martin F, Dausort M, Dasnoy-Sumell D, Montero A M B, Macq B
Optimal Fractionation Scheduling for Radiotherapy Treatments with Reinforcement Learning, Tumor Growth Modeling and Outcome Modeling Journal Article
In: Biomedicines, vol. 13, no. 6, pp. 1367, 2025, ISSN: 2227-9059.
@article{ghislain_optimal_2025,
title = {Optimal Fractionation Scheduling for Radiotherapy Treatments with Reinforcement Learning, Tumor Growth Modeling and Outcome Modeling},
author = {Mélanie Ghislain and Florian Martin and Manon Dausort and Damien Dasnoy-Sumell and Ana Maria Barragan Montero and Benoît Macq},
url = {https://www.mdpi.com/2227-9059/13/6/1367},
doi = {10.3390/biomedicines13061367},
issn = {2227-9059},
year = {2025},
date = {2025-06-01},
urldate = {2026-05-18},
journal = {Biomedicines},
volume = {13},
number = {6},
pages = {1367},
abstract = {Objective: Radiotherapy is a primary method for cancer treatment, wherein radiation doses are divided into multiple sessions or fractions to effectively target tumors and minimize damage to surrounding tissues. Methods: In this study, we leverage reinforcement learning (RL) to enhance treatment planning with the aim of improving the adaptability and robustness of RL agents given the inherent inaccuracies in tumor growth models. A 2D simulation model of tumor growth is employed, where tabular RL techniques are used to determine the optimal treatment strategies. We emphasize the significance of tissue damage predictions and incorporate the Lyman NTCP model to assess treatment outcomes, analyzing complications across three simulated body sites: the rectum, head and neck and lung. Results: For all the tumor sites, the RL approach significantly reduces healthy tissue damage by 10.7%, 49.1% and 37.5%, respectively, for rectal, head and neck and lung cancers compared with the baseline treatment. Conclusions: The RL-based approach in radiotherapy not only achieves tumor eradication but also significantly reduces healthy tissue damage compared with traditional treatment methods. This study demonstrates the potential of reinforcement learning to optimize treatment planning in radiotherapy, offering a promising path towards more personalized and effective cancer treatments.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Elskens A, Foucart A, Debeir O, Decaestecker C
Impact of Pre-processing and Local Feature Extraction on Feature-Based Registration of Whole-Slide Images Miscellaneous
2025.
@misc{elskens_impact_2025,
title = {Impact of Pre-processing and Local Feature Extraction on Feature-Based Registration of Whole-Slide Images},
author = {Arthur Elskens and Adrien Foucart and Olivier Debeir and Christine Decaestecker},
url = {https://www.researchsquare.com/article/rs-6678947/v1},
doi = {10.21203/rs.3.rs-6678947/v1},
year = {2025},
date = {2025-05-01},
urldate = {2026-05-18},
publisher = {In Review},
abstract = {Abstract
Feature-based registration has gained increasing popularity in digital pathology as a means of achieving initial global, low-resolution alignment between image pairs. Despite its widespread adoption, the specific design choices within registration pipelines are often insufficiently justified. This study presents a comprehensive benchmarking analysis on consecutive multi-stained whole-slide images to evaluate the performance of various pre-processing and local feature extraction methods. Both traditional and deep learning-based techniques are assessed to determine whether the latter consistently outperform the former. The findings underscore the critical importance of both pre-processing and feature description steps in influencing overall alignment quality. Notably,
Grayscale conversion
consistently surpasses
Hematoxylin deconvolution
as a pre-processing approach. While detector selection has a relatively minor impact on performance, descriptor choice plays a crucial role. Among the most robust descriptors identified are two deep learning-based methods (
SuperPoint
and
DISK
), as well as two classical algorithms (
BRIEF
and
O-BRIEF
), which deliver competitive results with lower computational demands. In more challenging registration scenarios, however,
SuperPoint
emerges as the most effective descriptor.},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
Feature-based registration has gained increasing popularity in digital pathology as a means of achieving initial global, low-resolution alignment between image pairs. Despite its widespread adoption, the specific design choices within registration pipelines are often insufficiently justified. This study presents a comprehensive benchmarking analysis on consecutive multi-stained whole-slide images to evaluate the performance of various pre-processing and local feature extraction methods. Both traditional and deep learning-based techniques are assessed to determine whether the latter consistently outperform the former. The findings underscore the critical importance of both pre-processing and feature description steps in influencing overall alignment quality. Notably,
Grayscale conversion
consistently surpasses
Hematoxylin deconvolution
as a pre-processing approach. While detector selection has a relatively minor impact on performance, descriptor choice plays a crucial role. Among the most robust descriptors identified are two deep learning-based methods (
SuperPoint
and
DISK
), as well as two classical algorithms (
BRIEF
and
O-BRIEF
), which deliver competitive results with lower computational demands. In more challenging registration scenarios, however,
SuperPoint
emerges as the most effective descriptor.
Dausort M, Godelaine T, Zanella M, Khoury K E, Salmon I, Macq B
Exploring Foundation Models Fine-Tuning for Cytology Classification Proceedings Article
In: 2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), pp. 1–5, IEEE, Houston, TX, USA, 2025, ISBN: 979-8-3315-2052-6.
@inproceedings{dausort_exploring_2025,
title = {Exploring Foundation Models Fine-Tuning for Cytology Classification},
author = {Manon Dausort and Tiffanie Godelaine and Maxime Zanella and Karim El Khoury and Isabelle Salmon and Benoît Macq},
url = {https://ieeexplore.ieee.org/document/10981249/},
doi = {10.1109/ISBI60581.2025.10981249},
isbn = {979-8-3315-2052-6},
year = {2025},
date = {2025-04-01},
urldate = {2026-05-18},
booktitle = {2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)},
pages = {1–5},
publisher = {IEEE},
address = {Houston, TX, USA},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Khoury K E, Zanella M, Gérin B, Godelaine T, Macq B, Mahmoudi S, Vleeschouwer C D, Ayed I B
Enhancing Remote Sensing Vision-Language Models for Zero-Shot Scene Classification Proceedings Article
In: ICASSP 2025 - 2025 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pp. 1–5, IEEE, Hyderabad, India, 2025, ISBN: 979-8-3503-6874-1.
@inproceedings{el_khoury_enhancing_2025,
title = {Enhancing Remote Sensing Vision-Language Models for Zero-Shot Scene Classification},
author = {Karim El Khoury and Maxime Zanella and Benoît Gérin and Tiffanie Godelaine and Benoît Macq and Saïd Mahmoudi and Christophe De Vleeschouwer and Ismail Ben Ayed},
url = {https://ieeexplore.ieee.org/document/10888395/},
doi = {10.1109/ICASSP49660.2025.10888395},
isbn = {979-8-3503-6874-1},
year = {2025},
date = {2025-04-01},
urldate = {2026-05-18},
booktitle = {ICASSP 2025 - 2025 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},
pages = {1–5},
publisher = {IEEE},
address = {Hyderabad, India},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Tim B, Clément F, Benoît M
Conformal Predictions for Human Action Recognition with Vision-Language Models Miscellaneous
2025, (Version Number: 2).
@misc{tim_conformal_2025,
title = {Conformal Predictions for Human Action Recognition with Vision-Language Models},
author = {Bary Tim and Fuchs Clément and Macq Benoît},
url = {https://arxiv.org/abs/2502.06631},
doi = {10.48550/ARXIV.2502.06631},
year = {2025},
date = {2025-01-01},
urldate = {2026-05-18},
publisher = {arXiv},
abstract = {Human-in-the-Loop (HITL) systems are essential in high-stakes, real-world applications where AI must collaborate with human decision-makers. This work investigates how Conformal Prediction (CP) techniques, which provide rigorous coverage guarantees, can enhance the reliability of state-of-the-art human action recognition (HAR) systems built upon Vision-Language Models (VLMs). We demonstrate that CP can significantly reduce the average number of candidate classes without modifying the underlying VLM. However, these reductions often result in distributions with long tails which can hinder their practical utility. To mitigate this, we propose tuning the temperature of the softmax prediction, without using additional calibration data. This work contributes to ongoing efforts for multi-modal human-AI interaction in dynamic real-world environments.},
note = {Version Number: 2},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
Fuchs C, Zanella M, Vleeschouwer C D
Online Gaussian Test-Time Adaptation of Vision-Language Models Miscellaneous
2025, (Version Number: 1).
@misc{fuchs_online_2025,
title = {Online Gaussian Test-Time Adaptation of Vision-Language Models},
author = {Clément Fuchs and Maxime Zanella and Christophe De Vleeschouwer},
url = {https://arxiv.org/abs/2501.04352},
doi = {10.48550/ARXIV.2501.04352},
year = {2025},
date = {2025-01-01},
urldate = {2026-05-18},
publisher = {arXiv},
abstract = {Online test-time adaptation (OTTA) of vision-language models (VLMs) has recently garnered increased attention to take advantage of data observed along a stream to improve future predictions. Unfortunately, existing methods rely on dataset-specific hyperparameters, significantly limiting their adaptability to unseen tasks. In response, we propose Online Gaussian Adaptation (OGA), a novel method that models the likelihoods of visual features using Gaussian distributions and incorporates zero-shot priors into an interpretable Maximum A Posteriori (MAP) estimation framework with fixed hyper-parameters across all datasets. We demonstrate that OGA outperforms state-of-the-art methods on most datasets and runs. Additionally, we show that combining OTTA with popular few-shot techniques (a practical yet overlooked setting in prior research) is highly beneficial. Furthermore, our experimental study reveals that common OTTA evaluation protocols, which average performance over at most three runs per dataset, are inadequate due to the substantial variability observed across runs for all OTTA methods. Therefore, we advocate for more rigorous evaluation practices, including increasing the number of runs and considering additional quantitative metrics, such as our proposed Expected Tail Accuracy (ETA), calculated as the average accuracy in the worst 10% of runs. We hope these contributions will encourage more rigorous and diverse evaluation practices in the OTTA community. Code is available at https://github.com/cfuchs2023/OGA .},
note = {Version Number: 1},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
Jimenez L G, Decaestecker C
Annotator Reliability and Probabilistic Consensus for Semantic Segmentation in Digital Pathology Miscellaneous
2025.
@misc{galvez_jimenez_annotator_2025,
title = {Annotator Reliability and Probabilistic Consensus for Semantic Segmentation in Digital Pathology},
author = {Laura Galvez Jimenez and Christine Decaestecker},
url = {https://www.ssrn.com/abstract=5271896},
doi = {10.2139/ssrn.5271896},
year = {2025},
date = {2025-01-01},
urldate = {2026-05-18},
publisher = {SSRN},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
Dessain Q, Delinte N, Hanseeuw B, Dricot L, Macq B
Leveraging Swin Transformer for enhanced diagnosis of Alzheimer's disease using multi-shell diffusion MRI Journal Article
In: IEEE Transactions on Biomedical Engineering, pp. 1–10, 2025, ISSN: 0018-9294, 1558-2531.
@article{dessain_leveraging_2025,
title = {Leveraging Swin Transformer for enhanced diagnosis of Alzheimer's disease using multi-shell diffusion MRI},
author = {Quentin Dessain and Nicolas Delinte and Bernard Hanseeuw and Laurence Dricot and Benoit Macq},
url = {https://ieeexplore.ieee.org/document/11267073/},
doi = {10.1109/TBME.2025.3636745},
issn = {0018-9294, 1558-2531},
year = {2025},
date = {2025-01-01},
urldate = {2026-05-13},
journal = {IEEE Transactions on Biomedical Engineering},
pages = {1–10},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
2024
Khoury K E, Godelaine T, Delvaux S, Lugan S, Macq B
Streamlined Hybrid Annotation Framework Using Scalable Codestream for Bandwidth-Restricted UAV Object Detection Proceedings Article
In: 2024 IEEE International Conference on Image Processing (ICIP), pp. 1581–1587, IEEE, Abu Dhabi, United Arab Emirates, 2024, ISBN: 979-8-3503-4939-9.
@inproceedings{khoury_streamlined_2024,
title = {Streamlined Hybrid Annotation Framework Using Scalable Codestream for Bandwidth-Restricted UAV Object Detection},
author = {Karim El Khoury and Tiffanie Godelaine and Simon Delvaux and Sébastien Lugan and Benoît Macq},
url = {https://ieeexplore.ieee.org/document/10647448/},
doi = {10.1109/ICIP51287.2024.10647448},
isbn = {979-8-3503-4939-9},
year = {2024},
date = {2024-10-01},
urldate = {2026-05-18},
booktitle = {2024 IEEE International Conference on Image Processing (ICIP)},
pages = {1581–1587},
publisher = {IEEE},
address = {Abu Dhabi, United Arab Emirates},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Boyer E, Deltenre L, Dourte M, Colmant L, Paître E, Sleegers K, Suelves N, Hanseeuw B, Kienlen-Campard P
Comparison of plasma soluble and extracellular vesicles-associated biomarkers in Alzheimer’s disease patients and cognitively normal individuals Journal Article
In: Alzheimer's Research & Therapy, vol. 16, no. 1, pp. 141, 2024, ISSN: 1758-9193.
@article{boyer_comparison_2024,
title = {Comparison of plasma soluble and extracellular vesicles-associated biomarkers in Alzheimer’s disease patients and cognitively normal individuals},
author = {Emilien Boyer and Louise Deltenre and Marion Dourte and Lise Colmant and Esther Paître and Kristel Sleegers and Nuria Suelves and Bernard Hanseeuw and Pascal Kienlen-Campard},
url = {https://alzres.biomedcentral.com/articles/10.1186/s13195-024-01508-6},
doi = {10.1186/s13195-024-01508-6},
issn = {1758-9193},
year = {2024},
date = {2024-06-01},
urldate = {2026-05-13},
journal = {Alzheimer's Research & Therapy},
volume = {16},
number = {1},
pages = {141},
abstract = {Abstract
Background
Amyloid-β (Aβ) and tau are brain hallmarks of Alzheimer’s disease (AD), also present in blood as soluble biomarkers or encapsulated in extracellular vesicles (EVs). Our goal was to assess how soluble plasma biomarkers of AD pathology correlate with the number and content of EVs.
Methods
Single-molecule enzyme-linked assays were used to quantify Aβ42/40 and tau in plasma samples and neurally-derived EVs (NDEVs) from a cohort of
APOE
ε4– (
n = 168) and
APOE
ε4+ (
n = 68) cognitively normal individuals and AD patients (
n = 55). The ratio of CD56 (Neuronal cell-adhesion molecule) to CD81 signal measured by ELISA-DELFIA was used for the relative quantification of NDEVs in plasma samples.
Results
The soluble plasma Aβ42/40 ratio is decreased in AD patients compared to cognitively normal individuals. The amount and content (Aβ40, Aβ42, tau) of plasma NDEVs were similar between groups. Plasma NDEVs quantity remain consistent with aging and between AD and CN individuals. However, the quantity of soluble biomarkers was negatively correlated to NDEVs number in cognitively normal individuals, while in AD patients, this correlation is lost, suggesting a shift in the mechanism underpinning the production and the release of these biomarkers in pathological conditions.
Conclusion
Soluble plasma Aβ42/40 ratio is the most robust biomarker to discriminate between AD patients and CN individuals, as it normalizes for the number of NDEVs. Analysis of NDEVs and their content pointed toward peculiar mechanisms of Aβ release in AD. Further research on independent cohorts can confirm our findings and assess whether plasma Aβ and tau need correction by NDEVs for better AD risk identification in CN populations.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Background
Amyloid-β (Aβ) and tau are brain hallmarks of Alzheimer’s disease (AD), also present in blood as soluble biomarkers or encapsulated in extracellular vesicles (EVs). Our goal was to assess how soluble plasma biomarkers of AD pathology correlate with the number and content of EVs.
Methods
Single-molecule enzyme-linked assays were used to quantify Aβ42/40 and tau in plasma samples and neurally-derived EVs (NDEVs) from a cohort of
APOE
ε4– (
n = 168) and
APOE
ε4+ (
n = 68) cognitively normal individuals and AD patients (
n = 55). The ratio of CD56 (Neuronal cell-adhesion molecule) to CD81 signal measured by ELISA-DELFIA was used for the relative quantification of NDEVs in plasma samples.
Results
The soluble plasma Aβ42/40 ratio is decreased in AD patients compared to cognitively normal individuals. The amount and content (Aβ40, Aβ42, tau) of plasma NDEVs were similar between groups. Plasma NDEVs quantity remain consistent with aging and between AD and CN individuals. However, the quantity of soluble biomarkers was negatively correlated to NDEVs number in cognitively normal individuals, while in AD patients, this correlation is lost, suggesting a shift in the mechanism underpinning the production and the release of these biomarkers in pathological conditions.
Conclusion
Soluble plasma Aβ42/40 ratio is the most robust biomarker to discriminate between AD patients and CN individuals, as it normalizes for the number of NDEVs. Analysis of NDEVs and their content pointed toward peculiar mechanisms of Aβ release in AD. Further research on independent cohorts can confirm our findings and assess whether plasma Aβ and tau need correction by NDEVs for better AD risk identification in CN populations.
Fuchs C, Dessain Q, Delinte N, Dausort M, Macq B
Sparse Blind Spherical Deconvolution of diffusion weighted MRI Journal Article
In: Frontiers in Neuroscience, vol. 18, pp. 1385975, 2024, ISSN: 1662-453X.
@article{fuchs_sparse_2024,
title = {Sparse Blind Spherical Deconvolution of diffusion weighted MRI},
author = {Clément Fuchs and Quentin Dessain and Nicolas Delinte and Manon Dausort and Benoît Macq},
url = {https://www.frontiersin.org/articles/10.3389/fnins.2024.1385975/full},
doi = {10.3389/fnins.2024.1385975},
issn = {1662-453X},
year = {2024},
date = {2024-05-01},
urldate = {2024-05-23},
journal = {Frontiers in Neuroscience},
volume = {18},
pages = {1385975},
abstract = {Diffusion-weighted magnetic resonance imaging provides invaluable insights into
in-vivo
neurological pathways. However, accurate and robust characterization of white matter fibers microstructure remains challenging. Widely used spherical deconvolution algorithms retrieve the fiber Orientation Distribution Function (ODF) by using an estimation of a response function, i.e., the signal arising from individual fascicles within a voxel. In this paper, an algorithm of blind spherical deconvolution is proposed, which only assumes the axial symmetry of the response function instead of its exact knowledge. This algorithm provides a method for estimating the peaks of the ODF in a voxel without any explicit response function, as well as a method for estimating signals associated with the peaks of the ODF, regardless of how those peaks were obtained. The two stages of the algorithm are tested on Monte Carlo simulations, as well as compared to state-of-the-art methods on real
in-vivo
data for the orientation retrieval task. Although the proposed algorithm was shown to attain lower angular errors than the state-of-the-art constrained spherical deconvolution algorithm on synthetic data, it was outperformed by state-of-the-art spherical deconvolution algorithms on
in-vivo
data. In conjunction with state-of-the art methods for axon bundles direction estimation, the proposed method showed its potential for the derivation of per-voxel per-direction metrics on synthetic as well as
in-vivo
data.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
in-vivo
neurological pathways. However, accurate and robust characterization of white matter fibers microstructure remains challenging. Widely used spherical deconvolution algorithms retrieve the fiber Orientation Distribution Function (ODF) by using an estimation of a response function, i.e., the signal arising from individual fascicles within a voxel. In this paper, an algorithm of blind spherical deconvolution is proposed, which only assumes the axial symmetry of the response function instead of its exact knowledge. This algorithm provides a method for estimating the peaks of the ODF in a voxel without any explicit response function, as well as a method for estimating signals associated with the peaks of the ODF, regardless of how those peaks were obtained. The two stages of the algorithm are tested on Monte Carlo simulations, as well as compared to state-of-the-art methods on real
in-vivo
data for the orientation retrieval task. Although the proposed algorithm was shown to attain lower angular errors than the state-of-the-art constrained spherical deconvolution algorithm on synthetic data, it was outperformed by state-of-the-art spherical deconvolution algorithms on
in-vivo
data. In conjunction with state-of-the art methods for axon bundles direction estimation, the proposed method showed its potential for the derivation of per-voxel per-direction metrics on synthetic as well as
in-vivo
data.
Colmant L, Boyer E, Gerard T, Sleegers K, Lhommel R, Ivanoiu A, Lefèvre P, Kienlen-Campard P, Hanseeuw B
In: International Journal of Molecular Sciences, vol. 25, no. 2, pp. 1173, 2024, ISSN: 1422-0067.
@article{colmant_definition_2024,
title = {Definition of a Threshold for the Plasma Aβ42/Aβ40 Ratio Measured by Single-Molecule Array to Predict the Amyloid Status of Individuals without Dementia},
author = {Lise Colmant and Emilien Boyer and Thomas Gerard and Kristel Sleegers and Renaud Lhommel and Adrian Ivanoiu and Philippe Lefèvre and Pascal Kienlen-Campard and Bernard Hanseeuw},
url = {https://www.mdpi.com/1422-0067/25/2/1173},
doi = {10.3390/ijms25021173},
issn = {1422-0067},
year = {2024},
date = {2024-01-01},
urldate = {2026-05-13},
journal = {International Journal of Molecular Sciences},
volume = {25},
number = {2},
pages = {1173},
abstract = {Alzheimer’s disease (AD) is characterized by amyloid beta (Aβ) plaques and hyperphosphorylated tau in the brain. Aβ plaques precede cognitive impairments and can be detected through amyloid-positron emission tomography (PET) or in cerebrospinal fluid (CSF). Assessing the plasma Aβ42/Aβ40 ratio seems promising for non-invasive and cost-effective detection of brain Aβ accumulation. This approach involves some challenges, including the accuracy of blood-based biomarker measurements and the establishment of clear, standardized thresholds to categorize the risk of developing brain amyloid pathology. Plasma Aβ42/Aβ40 ratio was measured in 277 volunteers without dementia, 70 AD patients and 18 non-AD patients using single-molecule array. Patients (n = 88) and some volunteers (n = 66) were subject to evaluation of amyloid status by CSF Aβ quantification or PET analysis. Thresholds of plasma Aβ42/Aβ40 ratio were determined based on a Gaussian mixture model, a decision tree, and the Youden’s index. The 0.0472 threshold, the one with the highest sensitivity, was retained for general population without dementia screening, and the 0.0450 threshold was retained for research and clinical trials recruitment, aiming to minimize the need for CSF or PET analyses to identify amyloid-positive individuals. These findings offer a promising step towards a cost-effective method for identifying individuals at risk of developing AD.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
2022
Ward B, Yombi J C, Balligand J, Cani P D, Collet J, Greef J D, Dewulf J P, Gatto L, Haufroid V, Jodogne S, Kabamba B, Ruys S P D, Vertommen D, Elens L, Belkhir L
HYGIEIA: HYpothesizing the Genesis of Infectious Diseases and Epidemics through an Integrated Systems Biology Approach Journal Article
In: Viruses, vol. 14, no. 7, pp. 1373, 2022, ISSN: 1999-4915.
@article{ward_hygieia_2022,
title = {HYGIEIA: HYpothesizing the Genesis of Infectious Diseases and Epidemics through an Integrated Systems Biology Approach},
author = {Bradley Ward and Jean Cyr Yombi and Jean-Luc Balligand and Patrice D. Cani and Jean-François Collet and Julien De Greef and Joseph P. Dewulf and Laurent Gatto and Vincent Haufroid and Sébastien Jodogne and Benoît Kabamba and Sébastien Pyr Dit Ruys and Didier Vertommen and Laure Elens and Leïla Belkhir},
url = {https://www.mdpi.com/1999-4915/14/7/1373},
doi = {10.3390/v14071373},
issn = {1999-4915},
year = {2022},
date = {2022-06-01},
urldate = {2026-05-18},
journal = {Viruses},
volume = {14},
number = {7},
pages = {1373},
abstract = {More than two years on, the COVID-19 pandemic continues to wreak havoc around the world and has battle-tested the pandemic-situation responses of all major global governments. Two key areas of investigation that are still unclear are: the molecular mechanisms that lead to heterogenic patient outcomes, and the causes of Post COVID condition (AKA Long-COVID). In this paper, we introduce the HYGIEIA project, designed to respond to the enormous challenges of the COVID-19 pandemic through a multi-omic approach supported by network medicine. It is hoped that in addition to investigating COVID-19, the logistics deployed within this project will be applicable to other infectious agents, pandemic-type situations, and also other complex, non-infectious diseases. Here, we first look at previous research into COVID-19 in the context of the proteome, metabolome, transcriptome, microbiome, host genome, and viral genome. We then discuss a proposed methodology for a large-scale multi-omic longitudinal study to investigate the aforementioned biological strata through high-throughput sequencing (HTS) and mass-spectrometry (MS) technologies. Lastly, we discuss how a network medicine approach can be used to analyze the data and make meaningful discoveries, with the final aim being the translation of these discoveries into the clinics to improve patient care.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}











