BIDS Managing and Analysis Tool
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BIDS Managing and Analysis Tool

ByNicolas Delinte

> Github repository
The BMAT software is a complete and easy-to-use local open-source neuroimaging analysis tool with a graphical user interface (GUI) that uses the BIDS format to organize and process brain MRI data for MS imaging research studies. BMAT provides the possibility to translate data from MRI scanners to the BIDS structure, create and manage BIDS datasets as well as develop and run automated processing pipelines.

BMAT is now compatible to work with remote server using shared samba folder and a slurm scheduler to process data on remote server. It has to be noted that this feature has been implemented for users based in the Institute of NeuroSciences (IoNS) from UCLouvain. Therefore, it may not work easily with every servers, but feel free to fork the code and adapt it for your institue.

Parrot
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Parrot

ByJulie Vandekerckhove

PARROT, which stands for Platform for ARtificial intelligence guided Radiation Oncology Treatment, is a user-friendly, free, and open-source web platform. It allows users to visualize DICOM files, run AI models, display and evaluate predictions easily. The platform includes several trained state-of-the-art dose prediction and contour segmentation models. Users can also add their own models using…

OpenTPS
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OpenTPS

ByCoordinateur MedReSyst

OpenTPS is an open-source treatment planning system (TPS) for research in radiation therapy and proton therapy. It was developed in Python with a special focus on simplifying contribution to the core functions to let the user develop their own features. It contains a variety of treatment planification and evaluation methods, as well as image processing and…